Index A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W A a1 (circstudio.analysis.models.math_models.HannaySP attribute) (circstudio.analysis.models.math_models.HannayTP attribute) a2 (circstudio.analysis.models.math_models.HannaySP attribute) (circstudio.analysis.models.math_models.HannayTP attribute) active_bouts() (in module circstudio.analysis.sleep.sleep) active_durations() (in module circstudio.analysis.sleep.sleep) adat() (in module circstudio.analysis.metrics.metrics) adatp() (in module circstudio.analysis.metrics.metrics) add_mask_period() (circstudio.io.mask.Mask method) add_mask_periods() (circstudio.io.mask.Mask method) alpha_0 (circstudio.analysis.models.math_models.Forger attribute) (circstudio.analysis.models.math_models.HannaySP attribute) (circstudio.analysis.models.math_models.HannayTP attribute) (circstudio.analysis.models.math_models.Jewett attribute) amplitude() (circstudio.analysis.models.math_models.Breslow13 method), [1] (circstudio.analysis.models.math_models.Forger method), [1] (circstudio.analysis.models.math_models.HannaySP method), [1] (circstudio.analysis.models.math_models.HannayTP method), [1] (circstudio.analysis.models.math_models.Hilaire07 method), [1] (circstudio.analysis.models.math_models.Jewett method), [1] (circstudio.analysis.models.math_models.Skeldon23 method), [1] AoffT() (in module circstudio.analysis.sleep.sleep) AonT() (in module circstudio.analysis.sleep.sleep) apply_filters() (circstudio.io.mask.Mask method) avoid_negative_h1() (circstudio.analysis.models.math_models.Breslow13 method) B BaseLog (class in circstudio.io.mask) best_fit() (circstudio.analysis.cosinor.cosinor.Cosinor method) beta (circstudio.analysis.models.math_models.Forger attribute) (circstudio.analysis.models.math_models.HannaySP attribute) (circstudio.analysis.models.math_models.Jewett attribute) betal1 (circstudio.analysis.models.math_models.HannaySP attribute) (circstudio.analysis.models.math_models.HannayTP attribute) betal2 (circstudio.analysis.models.math_models.HannaySP attribute) (circstudio.analysis.models.math_models.HannayTP attribute) Breslow13 (class in circstudio.analysis.models.math_models) C calculate() (circstudio.analysis.models.math_models.ESRI method) cbt() (circstudio.analysis.models.math_models.Breslow13 method), [1] (circstudio.analysis.models.math_models.Forger method), [1] (circstudio.analysis.models.math_models.HannaySP method), [1] (circstudio.analysis.models.math_models.HannayTP method), [1] (circstudio.analysis.models.math_models.Hilaire07 method), [1] (circstudio.analysis.models.math_models.Jewett method), [1] (circstudio.analysis.models.math_models.Skeldon23 method), [1] cbt_to_dlmo (circstudio.analysis.models.math_models.Breslow13 attribute) (circstudio.analysis.models.math_models.Forger attribute) (circstudio.analysis.models.math_models.HannaySP attribute) (circstudio.analysis.models.math_models.HannayTP attribute) (circstudio.analysis.models.math_models.Jewett attribute) (circstudio.analysis.models.math_models.Skeldon23 attribute) circstudio.analysis.cosinor.cosinor module circstudio.analysis.metrics.metrics module circstudio.analysis.models.math_models module circstudio.analysis.sleep.diary module circstudio.analysis.sleep.sleep module circstudio.io.base module circstudio.io.mask module Cole_Kripke() (in module circstudio.analysis.sleep.sleep) Cosinor (class in circstudio.analysis.cosinor.cosinor) create_inactivity_mask() (circstudio.io.mask.Mask method) Crespo() (in module circstudio.analysis.sleep.sleep) Crespo_AoT() (in module circstudio.analysis.sleep.sleep) CSM() (in module circstudio.analysis.sleep.sleep) cumulative_rmse() (circstudio.analysis.models.math_models.ModelComparer method) D daily_profile() (in module circstudio.analysis.metrics.metrics) daily_profile_auc() (in module circstudio.analysis.metrics.metrics) data (circstudio.analysis.models.math_models.Model attribute) (circstudio.analysis.models.math_models.Skeldon23 attribute) delta (circstudio.analysis.models.math_models.HannaySP attribute) (circstudio.analysis.models.math_models.HannayTP attribute) derivative() (circstudio.analysis.models.math_models.Breslow13 method), [1] (circstudio.analysis.models.math_models.Forger method), [1] (circstudio.analysis.models.math_models.HannaySP method), [1] (circstudio.analysis.models.math_models.HannayTP method), [1] (circstudio.analysis.models.math_models.Hilaire07 method), [1] (circstudio.analysis.models.math_models.Jewett method), [1] (circstudio.analysis.models.math_models.Skeldon23 method) diary (circstudio.analysis.sleep.diary.SleepDiary property) dlmos() (circstudio.analysis.models.math_models.Model method) (circstudio.analysis.models.math_models.Skeldon23 method) duration() (circstudio.io.base.Raw method) E ESRI (class in circstudio.analysis.models.math_models) esri_time_step (circstudio.analysis.models.math_models.ESRI attribute) F find_optimal_params() (circstudio.analysis.models.math_models.ModelComparer method) fit() (circstudio.analysis.cosinor.cosinor.Cosinor method) fname (circstudio.io.mask.BaseLog attribute) (circstudio.io.mask.BaseLog property) forced_wakeup_light_threshold (circstudio.analysis.models.math_models.Skeldon23 attribute) forced_wakeup_weekday_only (circstudio.analysis.models.math_models.Skeldon23 attribute) forger (circstudio.analysis.models.math_models.ModelComparer attribute) Forger (class in circstudio.analysis.models.math_models) from_file() (circstudio.io.mask.BaseLog class method) fSoD() (in module circstudio.analysis.sleep.sleep) G g (circstudio.analysis.models.math_models.Forger attribute) (circstudio.analysis.models.math_models.HannaySP attribute) (circstudio.analysis.models.math_models.HannayTP attribute) (circstudio.analysis.models.math_models.Jewett attribute) gamma (circstudio.analysis.models.math_models.HannaySP attribute) (circstudio.analysis.models.math_models.HannayTP attribute) get_extremum() (in module circstudio.analysis.metrics.metrics) get_initial_conditions() (circstudio.analysis.models.math_models.Model method) (circstudio.analysis.models.math_models.Skeldon23 method) get_time_barycentre() (in module circstudio.analysis.metrics.metrics) H h1_threshold (circstudio.analysis.models.math_models.Breslow13 attribute) half_life_crmse() (circstudio.analysis.models.math_models.ModelComparer method) hannay (circstudio.analysis.models.math_models.ModelComparer attribute) HannaySP (class in circstudio.analysis.models.math_models) HannayTP (class in circstudio.analysis.models.math_models) Hilaire07 (class in circstudio.analysis.models.math_models) hilaire_correction (circstudio.analysis.models.math_models.Forger attribute) I i0 (circstudio.analysis.models.math_models.Forger attribute) (circstudio.analysis.models.math_models.HannaySP attribute) (circstudio.analysis.models.math_models.HannayTP attribute) (circstudio.analysis.models.math_models.Jewett attribute) inactivity_length (circstudio.io.mask.Mask attribute) (circstudio.io.mask.Mask property) initial_amplitude (circstudio.analysis.models.math_models.ESRI attribute) initial_conditions (circstudio.analysis.models.math_models.Breslow13 attribute) (circstudio.analysis.models.math_models.Forger attribute) (circstudio.analysis.models.math_models.HannaySP attribute) (circstudio.analysis.models.math_models.HannayTP attribute) (circstudio.analysis.models.math_models.Jewett attribute) (circstudio.analysis.models.math_models.Model attribute) (circstudio.analysis.models.math_models.Skeldon23 attribute) initialize_model_states() (circstudio.analysis.models.math_models.Model method) inputs (circstudio.analysis.models.math_models.Breslow13 attribute) (circstudio.analysis.models.math_models.Forger attribute) (circstudio.analysis.models.math_models.HannaySP attribute) (circstudio.analysis.models.math_models.HannayTP attribute) (circstudio.analysis.models.math_models.Jewett attribute) (circstudio.analysis.models.math_models.Model attribute) (circstudio.analysis.models.math_models.Skeldon23 attribute) integrate() (circstudio.analysis.models.math_models.Model method) integrate_piecewise_odeint() (circstudio.analysis.models.math_models.Skeldon23 method) IS() (in module circstudio.analysis.metrics.metrics) ISp() (in module circstudio.analysis.metrics.metrics) IV() (in module circstudio.analysis.metrics.metrics) IVp() (in module circstudio.analysis.metrics.metrics) J Jewett (class in circstudio.analysis.models.math_models) K k (circstudio.analysis.models.math_models.Forger attribute) (circstudio.analysis.models.math_models.HannaySP attribute) (circstudio.analysis.models.math_models.Jewett attribute) kAR() (in module circstudio.analysis.metrics.metrics) kdd (circstudio.analysis.models.math_models.HannayTP attribute) kdv (circstudio.analysis.models.math_models.HannayTP attribute) kRA() (in module circstudio.analysis.metrics.metrics) kvd (circstudio.analysis.models.math_models.HannayTP attribute) kvv (circstudio.analysis.models.math_models.HannayTP attribute) L l5() (in module circstudio.analysis.metrics.metrics) l5p() (in module circstudio.analysis.metrics.metrics) length() (circstudio.io.base.Raw method) light_exposure() (in module circstudio.analysis.metrics.metrics) light_vector (circstudio.analysis.models.math_models.ESRI attribute) (circstudio.analysis.models.math_models.ModelComparer attribute) linearize_phase() (circstudio.analysis.models.math_models.ModelComparer method) lmx() (in module circstudio.analysis.metrics.metrics) log (circstudio.io.mask.BaseLog attribute) (circstudio.io.mask.BaseLog property) M m10() (in module circstudio.analysis.metrics.metrics) m10p() (in module circstudio.analysis.metrics.metrics) main() (in module circstudio.analysis.models.math_models) main_sleep_bouts() (in module circstudio.analysis.sleep.sleep) mask (circstudio.io.mask.Mask attribute) (circstudio.io.mask.Mask property) Mask (class in circstudio.io.mask) mean (circstudio.analysis.models.math_models.ESRI attribute) melatonin_drive() (circstudio.analysis.models.math_models.Breslow13 method) midnight_phase (circstudio.analysis.models.math_models.ESRI attribute) mlit() (in module circstudio.analysis.metrics.metrics) mlitp() (in module circstudio.analysis.metrics.metrics) Model (class in circstudio.analysis.models.math_models) model_states (circstudio.analysis.models.math_models.Breslow13 attribute) (circstudio.analysis.models.math_models.Forger attribute) (circstudio.analysis.models.math_models.HannaySP attribute) (circstudio.analysis.models.math_models.HannayTP attribute) (circstudio.analysis.models.math_models.Jewett attribute) (circstudio.analysis.models.math_models.Model attribute) (circstudio.analysis.models.math_models.Skeldon23 attribute) ModelComparer (class in circstudio.analysis.models.math_models) module circstudio.analysis.cosinor.cosinor circstudio.analysis.metrics.metrics circstudio.analysis.models.math_models circstudio.analysis.sleep.diary circstudio.analysis.sleep.sleep circstudio.io.base circstudio.io.mask mu (circstudio.analysis.models.math_models.Forger attribute) (circstudio.analysis.models.math_models.Jewett attribute) N name (circstudio.analysis.sleep.diary.SleepDiary property) O Oakley() (in module circstudio.analysis.sleep.sleep) P p (circstudio.analysis.models.math_models.Forger attribute) (circstudio.analysis.models.math_models.HannaySP attribute) (circstudio.analysis.models.math_models.HannayTP attribute) (circstudio.analysis.models.math_models.Jewett attribute) pAR() (in module circstudio.analysis.metrics.metrics) phase() (circstudio.analysis.models.math_models.Breslow13 method), [1] (circstudio.analysis.models.math_models.Forger method), [1] (circstudio.analysis.models.math_models.HannaySP method), [1] (circstudio.analysis.models.math_models.HannayTP method), [1] (circstudio.analysis.models.math_models.Hilaire07 method), [1] (circstudio.analysis.models.math_models.Jewett method), [1] (circstudio.analysis.models.math_models.Skeldon23 method), [1] phase_vector (circstudio.analysis.models.math_models.ModelComparer attribute) phi_off (circstudio.analysis.models.math_models.Breslow13 attribute) phi_on (circstudio.analysis.models.math_models.Breslow13 attribute) phi_ref (circstudio.analysis.models.math_models.Breslow13 attribute) (circstudio.analysis.models.math_models.Jewett attribute) plot() (circstudio.analysis.cosinor.cosinor.Cosinor method) (circstudio.analysis.models.math_models.Model method) (circstudio.analysis.models.math_models.Skeldon23 method) (circstudio.analysis.sleep.diary.SleepDiary method) (circstudio.io.base.Raw method) pRA() (in module circstudio.analysis.metrics.metrics) predict_forger() (circstudio.analysis.models.math_models.ModelComparer method) Q q (circstudio.analysis.models.math_models.Jewett attribute) R ra() (in module circstudio.analysis.metrics.metrics) rap() (in module circstudio.analysis.metrics.metrics) Raw (class in circstudio.io.base) raw_data (circstudio.analysis.sleep.diary.SleepDiary property) raw_values (circstudio.analysis.models.math_models.ESRI attribute) read_sleep_diary() (circstudio.io.base.Raw method) reset_filters() (circstudio.io.mask.Mask method) rmse() (circstudio.analysis.models.math_models.ModelComparer method) Roenneberg() (in module circstudio.analysis.sleep.sleep) Roenneberg_AoT() (in module circstudio.analysis.sleep.sleep) run() (circstudio.analysis.models.math_models.Skeldon23 method) S s0 (circstudio.analysis.models.math_models.Skeldon23 attribute) Sadeh() (in module circstudio.analysis.sleep.sleep) Scripps() (in module circstudio.analysis.sleep.sleep) shaded_area (circstudio.analysis.sleep.diary.SleepDiary property) shapes() (circstudio.analysis.sleep.diary.SleepDiary method) sigma (circstudio.analysis.models.math_models.HannaySP attribute) (circstudio.analysis.models.math_models.HannayTP attribute) Skeldon23 (class in circstudio.analysis.models.math_models) sleep_bouts() (in module circstudio.analysis.sleep.sleep) sleep_durations() (in module circstudio.analysis.sleep.sleep) sleep_efficiency() (circstudio.analysis.sleep.diary.SleepDiary method) sleep_onset_latency() (circstudio.analysis.sleep.diary.SleepDiary method) sleep_vector() (circstudio.analysis.models.math_models.Hilaire07 method) SleepDiary (class in circstudio.analysis.sleep.diary) SleepMidPoint() (in module circstudio.analysis.sleep.sleep) SleepProfile() (in module circstudio.analysis.sleep.sleep) SleepRegularityIndex() (in module circstudio.analysis.sleep.sleep) SoD() (in module circstudio.analysis.sleep.sleep) spectral_centroid() (in module circstudio.analysis.metrics.metrics) state_colour (circstudio.analysis.sleep.diary.SleepDiary property) state_index (circstudio.analysis.sleep.diary.SleepDiary property) state_infos() (circstudio.analysis.sleep.diary.SleepDiary method) std (circstudio.analysis.models.math_models.ESRI attribute) summary() (circstudio.analysis.sleep.diary.SleepDiary method) (circstudio.io.mask.BaseLog method) summary_stats() (in module circstudio.analysis.metrics.metrics) T TAT() (in module circstudio.analysis.metrics.metrics) TATp() (in module circstudio.analysis.metrics.metrics) tau (circstudio.analysis.models.math_models.HannaySP attribute) tauc (circstudio.analysis.models.math_models.Breslow13 attribute) taud (circstudio.analysis.models.math_models.HannayTP attribute) tauv (circstudio.analysis.models.math_models.HannayTP attribute) taux (circstudio.analysis.models.math_models.Forger attribute) (circstudio.analysis.models.math_models.Jewett attribute) temporal_centroid() (in module circstudio.analysis.metrics.metrics) time (circstudio.analysis.models.math_models.Breslow13 attribute) (circstudio.analysis.models.math_models.Forger attribute) (circstudio.analysis.models.math_models.HannaySP attribute) (circstudio.analysis.models.math_models.HannayTP attribute) (circstudio.analysis.models.math_models.Jewett attribute) (circstudio.analysis.models.math_models.Model attribute) (circstudio.analysis.models.math_models.Skeldon23 attribute) time_range() (circstudio.io.base.Raw method) time_vector (circstudio.analysis.models.math_models.ESRI attribute) (circstudio.analysis.models.math_models.ModelComparer attribute) total_bed_time() (circstudio.analysis.sleep.diary.SleepDiary method) total_nap_time() (circstudio.analysis.sleep.diary.SleepDiary method) total_nowear_time() (circstudio.analysis.sleep.diary.SleepDiary method) U update_sleep_state() (circstudio.analysis.models.math_models.Skeldon23 method) V VAT() (in module circstudio.analysis.metrics.metrics) W waso() (in module circstudio.analysis.sleep.sleep) window_size (circstudio.analysis.models.math_models.ESRI attribute)